Scaffold Ga0194048_10019862

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10019862
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2929
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014954	Metagenome	258	Y
F033353	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_100198627	F014954	AGGA	MKTITLDRARYTVRDDRHSFLSDILKLTGKHKPVKSKGGDRRLYPTDGNVSTADYVAQYYALNSGRWPKLQGSPYGLNNTLAGFYENLSDRLTVPEGEDSMELCHED
Ga0194048_100198628	F033353	GGAG	MRTEFHNEEFMITSEVTQTPDGRWRVLLRDDDSGQTVGHQTFYTNEADALAYAEKLCS