Scaffold Ga0194048_10011747

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10011747
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3966
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004670	Metagenome	428	Y
F005451	Metagenome	400	Y
F023340	Metagenome	210	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_100117475	F005451	AGGA	MSNRVYPYYPSWDGKQTQPVTAKLVELCGKRWGLTSLGTYANRPMRSGAGLSVHATGFAADLKYKDETQARAIWDWFLTNSQALGLCEMHWYNYGDYGAGYRCSRGEGKTGVKVFTATDNAGSYEGNPNWFHIELASQTAEHFDQVFRALKL
Ga0194048_100117476	F004670	GAG	MTYTELPLFRATDPETSRQVNPIRVGTHRAILLEQYFYATLGLTDEEAGARAALAGHDIKGYWKRCSDLRTIGLIQDLGIRRALLSGSQGIVCGITQQGMDMVRGWA
Ga0194048_100117477	F023340	GGTGG	MMLPSWGYMPLWSKDKLTLVQIFTDTATEEIVKVTVATRQAHWQAFASITEVEKVD