Scaffold Ga0194048_10001238

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10001238
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12684
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050988	Metagenome	144	Y
F093507	Metagenome	106	N
F098909	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_100012382	F050988	N/A	MTRDISDEHAAYRAALEQIARYKHTPRAYRHQKFEQLVKIAQEALTTTTDAT
Ga0194048_100012383	F093507	AGCAG	MKRSELIHQPDIWPLIAAKIPEVVDTIGETIEAVTRRRDFNEQIEAKYRVGEVAHDRDWLTWTDPHRFIVEAAEELHDLIVYQAMLLVWLDAELSDSPSSVTL
Ga0194048_100012384	F098909	N/A	MKTTIFIAPAHLARIHDGFELANMIHEAAFDALTMHKIPFDPLVVHTLIAKITTALADECDTGTTADGDAYHLVPVTTYIPTEKADAA