Scaffold Ga0194048_10001172

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10001172
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13066
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria → Candidatus Nomurabacteria bacterium RIFCSPLOWO2_01_FULL_42_17 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051687	Metagenome	143	N
F067392	Metagenome	125	N
F094889	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_1000117212	F094889	AGG	VSDATLDEHADALDSERKDRAVAMLGLPELIAGVQVEPLTPRRLEWLRAMGNPFVCGGECPIAAIPDFLWYITKDFAFGDDERRRAFLAAILDLDVDEAREGIDEYLDRAFLDAGPGREGVSFYGSTAGLYCSLNTAYPGAGWHLERVLDTPLRVLYQLIKAADDARGCSMQNRRSSPLISKFLCEIEHFELSIVADFDAEMDAFVDAKCAEGYKLCSEPIQKINLAIPAACQQDAPWIVPMRKVD
Ga0194048_1000117214	F067392	AGCAG	MSTPNRVMVGTLSSVTFDGPGRYVRPFQDRGDTQSFEWHIDCYQLAANFTPFQNSRFYSTGFVSPVENMQYVTTTLGVAYLVHEEQPEYTACKGWLKFKRVYASLPITRQEGTSVTHSFQYYSTSASYDWENPPPAPEVAEWPLVCAGYYLYEYFLSYWPDVIRAPKISSIFGILLKTNWPPPTSGPFVSKDSEISIYKGSIIERKTLYVNAPTLAQLV
Ga0194048_100011729	F051687	N/A	MRNSGFKMDMSGIRRKQRELAAIPARIFKPEISNYLLRPSLNKARAATHGQDLATIRENQVGKPNSQYAKWRARGGGQGVTKAQFLADRAPARFLFQLQWVQVGYSLGVNVTASAAVLSATTRNHDEPDIPQGRGQWHGGETKLTASISVPFLDEPERKYKPFTGQGILTPIMAAQFPVFNRACERKMKRVVAAIARS