NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194045_1000037

Scaffold Ga0194045_1000037


Overview

Basic Information
Taxon OID3300021516 Open in IMG/M
Scaffold IDGa0194045_1000037 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L626-11m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35144
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (23.40%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Associated Families12

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.753Long. (o)-93.798Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005050Metagenome / Metatranscriptome413Y
F008936Metagenome325Y
F024717Metagenome204Y
F025680Metagenome200N
F033329Metagenome177N
F034061Metagenome175N
F059603Metagenome133N
F061497Metagenome131Y
F065376Metagenome127Y
F070850Metagenome122Y
F079784Metagenome115N
F085061Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0194045_100003710F061497N/AMTEITLEGGYVTFYSQSIGVVASNVESCEVVDDNSLHLGTIVGVLLINIAEFTINGITFSTSAEAVTYILNN
Ga0194045_100003712F024717N/AMATPKEISERIDGLFSEWSGGFTPLFVAVLDMRREMYIRIFGIDTGRGQNQAGNFLPTVPYSKAYAKIKAANGKPPLELTGFLKRSFGTDQSSVSNQGFSSFIYLQADEAGKALGLEKGVASGNPKYKTFKGYGTIFQPTKEEQDAMLQIHADLLVEEISNQISKP
Ga0194045_100003713F034061N/AMCYESLLGLQGCDRPEPTTGLYIDDLGINQTLLGQLITNQYNTGVELFEAKRAFAWRKMSTDILSRLSPMMKADTVVESKRIGQVLTNASNVDLAVGAGKYTGIRVTIDPNTLSFLNFYLSNFKIDIYTMAVPVEIFVYDMSTLKLIDSFFYQSEAVEQFIGKTFKANRRKMDLAFVYESLYDTTKMIPKKGSCTDCGGSLRAVHVCPFVDAIGIELTTDGFNVLSSKAKKYTQGMSLVYNVNCDREAWLCSIGGLMAMPLAYATAVEIYNYGLTISPNQRVNTTVSVNTGFATSDPNDGMIAGRDIAATRYNEELTAMLQNMRLPDDNTCFDCRRNMKYVTALP
Ga0194045_100003716F008936N/AMASFDELVARKIKMLETVPETIVTAAEKAQRDAWRKLGPLLAEMDVDATGNIRQTEDNIRRIGLITDELNKVLAGGEYKDAVQSFLSSIDEGVQLTDDIAKKIDASFQPDNVQRQLLAISKQNAINAFFGSGLKENVTQPFLEQLTANVAARAPLNQAVKALQGVIEGTETTDGRLLANVRTTANTAQAIADRSYAATVNEELGIDYFQYLGGEIPTTRPFCAHREGAVFHRKEIEQWGDGKNSAGINDIRNGTWDGRIDGTDSRSIFTFVGGWNCRHFLVPVIKQKVPPSVIARAKSEGYT
Ga0194045_100003720F070850AGGMTEEFTTTTQSTAPTTGVVLLAFGKVQYYWAAFNLAFSIKKHSPNVSITVLFDDVLKAVSQCPDIVKYVEHFADINPADIYTNKKLDPGKVKVNLYKYLPYDCNLYLDVDAVALKDIQPMIDELAQSGKDYISHCVGYHTIDKGRDFKEMQWAYADKMWAHFDLPSDAVMPAINSSMQWIVKGSQTQELYQQARHLYMDKTIEPKDLRMKWGGGQPDELYMNVALAILGIDPALKAYEKIKGSEGGMIHFSMQRGLNFQEIIDNYYLQSYYGGAGFTPRFYIDWLDRMLAADFKAIGSRHIYQLARIAENKYADGKR
Ga0194045_100003721F005050N/AMACVSYCDTSLLDHNLVNCNEYKLGGVSAVIIGACGTELVDPSDAVEVDALLSAGTAKLISDIRFALPAGSPITVDSPIGCGTSIRINEDRTATLYDANVTDENNAFYNELNNKRISWILAYMCDSGKVLYITAPVGITTSASFILPEQNNELQRYEGTFSWRNKNIPFQYDAPPGVF
Ga0194045_100003726F025680N/AMKYIKELKGRLRSLLGSKKTTHNLVEVFTHEGHTYYRFPKEVNLPLERFSMSMSLLERLSSGVSGGEMELILTEMEKALGAGLTNPKNAALIGAYIHVIRERQDTVIHRDILLNIAATWMIRDDENPDIVNSDIHNYKLELFEQLSKGGAKDFFSGLGIDPLMPLLTMSPEDFQILWEYNLVQQRNLRDSLFRLSSHRDNGRKRQATT
Ga0194045_100003735F059603N/AMELTTEQKIIKTMCEWYPIEGKIIDGCVTYHSTQRTHESFRLHLMNADPESIVYSYYLSRCAKWIKTLKLHNQKLIPIFAPNGTED
Ga0194045_100003742F033329N/AMPRNKNSTHPTYTFFMSRDIYNSIEAINASSIKRHYTGSIQYAAGALERGAEFHRNLLETEPNDMPPNARQVFDAIMKHPMLRLIFEKSAKEITFIKEVEIDGRKVAAKGILDLHCPMYSINADIKTTSCTTLRSFASDMTKHYNHIQAVWYSYLTGYLPTNFYYIGVPNKFKGELFIHRHTPSEIEEAENLIRSFLVHRGL
Ga0194045_100003745F085061N/AMNPLDNIGAEFANFNRYMDAIIDPREADDDTPQAKVKEAIIQAYSNGFHDGQQSMFKRLPKPSNTGGDEGGREYYDAL
Ga0194045_100003746F065376N/AMNAANIENISEFYKSLNSTEVLRAQGMIEGAPRIIEDKLSYDMSAESIKAANDAIKHIEINRKMVTLPLDTYKKSVMDVERDATAPLKAYIEQRKQMMVEYSNELAAKKAEADAKIAQDAADALMSASTSDVSGIFATFTDATTTTTLELDHTKNIRISKKAEIVGDVEWETVLMTLLNAEMLDIQDLLRKLPKAMEITRTIAIRGIQLTEVKTQVIR
Ga0194045_10000376F079784N/AMTRKPVSKFKQVLDILLKYWRPTIGSLVILGSVFALIFKQITTETLAAIVAAMVAAGYIPKSSDNG

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