Scaffold Ga0194045

Basic Information
Taxon OID	3300021516 Open in IMG/M
Scaffold ID	Ga0194045_1000037 Open in IMG/M
Source Dataset Name	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L626-11m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0194045_1000037 Open in IMG/M

Source Dataset Name

Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L626-11m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35144
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (23.40%)
Novel Protein Genes	12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (8.33%)
Associated Families	12

Scaffold Components

Scaffold Length (bps)

35144

Total Scaffold Genes

47 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (23.40%)

Novel Protein Genes

12 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (8.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location Name	Canada: Ontario
Coordinates	Lat. (^o)	49.753	Long. (^o)	-93.798	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Ontario

Coordinates

Lat. (^o)

49.753

Long. (^o)

-93.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F005050	Metagenome / Metatranscriptome	413	Y
F008936	Metagenome	325	Y
F024717	Metagenome	204	Y
F025680	Metagenome	200	N
F033329	Metagenome	177	N
F034061	Metagenome	175	N
F059603	Metagenome	133	N
F061497	Metagenome	131	Y
F065376	Metagenome	127	Y
F070850	Metagenome	122	Y
F079784	Metagenome	115	N
F085061	Metagenome	111	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0194045_100003710	F061497	N/A	MTEITLEGGYVTFYSQSIGVVASNVESCEVVDDNSLHLGTIVGVLLINIAEFTINGITFSTSAEAVTYILNN
Ga0194045_100003712	F024717	N/A	MATPKEISERIDGLFSEWSGGFTPLFVAVLDMRREMYIRIFGIDTGRGQNQAGNFLPTVPYSKAYAKIKAANGKPPLELTGFLKRSFGTDQSSVSNQGFSSFIYLQADEAGKALGLEKGVASGNPKYKTFKGYGTIFQPTKEEQDAMLQIHADLLVEEISNQISKP
Ga0194045_100003713	F034061	N/A	MCYESLLGLQGCDRPEPTTGLYIDDLGINQTLLGQLITNQYNTGVELFEAKRAFAWRKMSTDILSRLSPMMKADTVVESKRIGQVLTNASNVDLAVGAGKYTGIRVTIDPNTLSFLNFYLSNFKIDIYTMAVPVEIFVYDMSTLKLIDSFFYQSEAVEQFIGKTFKANRRKMDLAFVYESLYDTTKMIPKKGSCTDCGGSLRAVHVCPFVDAIGIELTTDGFNVLSSKAKKYTQGMSLVYNVNCDREAWLCSIGGLMAMPLAYATAVEIYNYGLTISPNQRVNTTVSVNTGFATSDPNDGMIAGRDIAATRYNEELTAMLQNMRLPDDNTCFDCRRNMKYVTALP
Ga0194045_100003716	F008936	N/A	MASFDELVARKIKMLETVPETIVTAAEKAQRDAWRKLGPLLAEMDVDATGNIRQTEDNIRRIGLITDELNKVLAGGEYKDAVQSFLSSIDEGVQLTDDIAKKIDASFQPDNVQRQLLAISKQNAINAFFGSGLKENVTQPFLEQLTANVAARAPLNQAVKALQGVIEGTETTDGRLLANVRTTANTAQAIADRSYAATVNEELGIDYFQYLGGEIPTTRPFCAHREGAVFHRKEIEQWGDGKNSAGINDIRNGTWDGRIDGTDSRSIFTFVGGWNCRHFLVPVIKQKVPPSVIARAKSEGYT
Ga0194045_100003720	F070850	AGG	MTEEFTTTTQSTAPTTGVVLLAFGKVQYYWAAFNLAFSIKKHSPNVSITVLFDDVLKAVSQCPDIVKYVEHFADINPADIYTNKKLDPGKVKVNLYKYLPYDCNLYLDVDAVALKDIQPMIDELAQSGKDYISHCVGYHTIDKGRDFKEMQWAYADKMWAHFDLPSDAVMPAINSSMQWIVKGSQTQELYQQARHLYMDKTIEPKDLRMKWGGGQPDELYMNVALAILGIDPALKAYEKIKGSEGGMIHFSMQRGLNFQEIIDNYYLQSYYGGAGFTPRFYIDWLDRMLAADFKAIGSRHIYQLARIAENKYADGKR
Ga0194045_100003721	F005050	N/A	MACVSYCDTSLLDHNLVNCNEYKLGGVSAVIIGACGTELVDPSDAVEVDALLSAGTAKLISDIRFALPAGSPITVDSPIGCGTSIRINEDRTATLYDANVTDENNAFYNELNNKRISWILAYMCDSGKVLYITAPVGITTSASFILPEQNNELQRYEGTFSWRNKNIPFQYDAPPGVF
Ga0194045_100003726	F025680	N/A	MKYIKELKGRLRSLLGSKKTTHNLVEVFTHEGHTYYRFPKEVNLPLERFSMSMSLLERLSSGVSGGEMELILTEMEKALGAGLTNPKNAALIGAYIHVIRERQDTVIHRDILLNIAATWMIRDDENPDIVNSDIHNYKLELFEQLSKGGAKDFFSGLGIDPLMPLLTMSPEDFQILWEYNLVQQRNLRDSLFRLSSHRDNGRKRQATT
Ga0194045_100003735	F059603	N/A	MELTTEQKIIKTMCEWYPIEGKIIDGCVTYHSTQRTHESFRLHLMNADPESIVYSYYLSRCAKWIKTLKLHNQKLIPIFAPNGTED
Ga0194045_100003742	F033329	N/A	MPRNKNSTHPTYTFFMSRDIYNSIEAINASSIKRHYTGSIQYAAGALERGAEFHRNLLETEPNDMPPNARQVFDAIMKHPMLRLIFEKSAKEITFIKEVEIDGRKVAAKGILDLHCPMYSINADIKTTSCTTLRSFASDMTKHYNHIQAVWYSYLTGYLPTNFYYIGVPNKFKGELFIHRHTPSEIEEAENLIRSFLVHRGL
Ga0194045_100003745	F085061	N/A	MNPLDNIGAEFANFNRYMDAIIDPREADDDTPQAKVKEAIIQAYSNGFHDGQQSMFKRLPKPSNTGGDEGGREYYDAL
Ga0194045_100003746	F065376	N/A	MNAANIENISEFYKSLNSTEVLRAQGMIEGAPRIIEDKLSYDMSAESIKAANDAIKHIEINRKMVTLPLDTYKKSVMDVERDATAPLKAYIEQRKQMMVEYSNELAAKKAEADAKIAQDAADALMSASTSDVSGIFATFTDATTTTTLELDHTKNIRISKKAEIVGDVEWETVLMTLLNAEMLDIQDLLRKLPKAMEITRTIAIRGIQLTEVKTQVIR
Ga0194045_10000376	F079784	N/A	MTRKPVSKFKQVLDILLKYWRPTIGSLVILGSVFALIFKQITTETLAAIVAAMVAAGYIPKSSDNG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0194045_1000037

Overview

Ecosystem & Geography

Associated Families

Sequences