NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10000375

Scaffold Ga0210410_10000375


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10000375 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52614
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000192Metagenome / Metatranscriptome1666Y
F003498Metagenome / Metatranscriptome483Y
F006195Metagenome / Metatranscriptome379Y
F009287Metagenome / Metatranscriptome320Y

Sequences

Protein IDFamilyRBSSequence
Ga0210410_1000037519F009287AGGAGMRRDLFTVMLMVVLLGCGGSPHSTPPVGFVNQTRHSDADLQAIWAAAQQSVAQKIDLNPLQRVSASVPPDIRPGDPRALSFEPHQLSVAAEPDVSSELFFAATGEQRPDPTGMIACPKPCNVRYSTAYSFYQPELTRYAASWESTDDNFTIILEYEFENHILNGLGYDTTWR
Ga0210410_1000037524F003498GAGLCCASGDYRAPFKTHPTIMASASLSSRRNQLLEWFPFYVHRLVGEVRYRALKDYQQAWYLNLLFASWVSERPGYLPDDGQLWRLANARTRQFFEKECEPILCMFEREGSMTDGAVWIYNRVLLEIYDEQVLKFHKRKRKSSKFTDDNTTSYLDFEGTLKKENGREECKLHPESGLTQWGTCWGCYADKCSSSQAS
Ga0210410_1000037552F006195GAGMQLKILYGEGDAEVVASQAVSIQKAGHQVETAVGRKGIDEAVRRGAFDLVILGPTLTKNDRHHLPYVIKKAQAAIRVLVMHTDGERHPAVDANIDTGRSMADVVAKIAGLMAGGETVPHGLAKGAAAGK
Ga0210410_100003759F000192AGGAGGMAANQVVLYFDKQEDALLFTLAASSVMSAEGPVRSSDAVVKVAEEICKASRITTEGVLNS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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