Scaffold Ga0210410_10000228

Overview

Basic Information

• Taxon OID: 3300021479
• Scaffold ID: Ga0210410_10000228
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78623
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (79.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010184	Metagenome / Metatranscriptome	307	Y
F010267	Metagenome / Metatranscriptome	306	Y
F032418	Metagenome	180	Y
F076154	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_1000022823	F076154	AGGAG	VFRQLKSLILGGVPFGTRGKQVEPAAVRCGKYEARLEDYLQGAADVELTEHLDLCADCRAALERSRLGGELLREAWEPTSEPHSAFLAGVMARIREEKARAESPAAFWNPLEFLASRLSLSAAALLLALSVYMLGFGPRRAPSVPPSAGSELRAADFPQPPGDPESNDEVFQSLVETDNG
Ga0210410_1000022858	F032418	AGGAGG	MLATFAFDVCHDVYRAAREVIDTKIPTLNMESSGKYIWRPDRMPRLAEYVADFSRAGERALEGRGKLHPSSSFRASRMAMFRVHYLGGAEYPAARRHLGISELTWADWAEEIRTRVGQELTRTGVFPPSKYFHSYSIPAPGNVA
Ga0210410_1000022863	F010267	GGAGG	MTTSPSQSLGQWVQLAGAGAFIIGAILSLHHYAIGICFVAGAAAFYVGKKMRAA
Ga0210410_1000022865	F010184	N/A	MLTELFRRASLALRGRYVRMLEEEVTRLRGENRALVNSLLGTAGFPPIALDDDVRRGPVAMSPVRRRTWTQIARDREVAAAKSAPNK