NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210410_10000228

Scaffold Ga0210410_10000228


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10000228 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)78623
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (79.41%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010184Metagenome / Metatranscriptome307Y
F010267Metagenome / Metatranscriptome306Y
F032418Metagenome180Y
F076154Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0210410_1000022823F076154AGGAGVFRQLKSLILGGVPFGTRGKQVEPAAVRCGKYEARLEDYLQGAADVELTEHLDLCADCRAALERSRLGGELLREAWEPTSEPHSAFLAGVMARIREEKARAESPAAFWNPLEFLASRLSLSAAALLLALSVYMLGFGPRRAPSVPPSAGSELRAADFPQPPGDPESNDEVFQSLVETDNG
Ga0210410_1000022858F032418AGGAGGMLATFAFDVCHDVYRAAREVIDTKIPTLNMESSGKYIWRPDRMPRLAEYVADFSRAGERALEGRGKLHPSSSFRASRMAMFRVHYLGGAEYPAARRHLGISELTWADWAEEIRTRVGQELTRTGVFPPSKYFHSYSIPAPGNVA
Ga0210410_1000022863F010267GGAGGMTTSPSQSLGQWVQLAGAGAFIIGAILSLHHYAIGICFVAGAAAFYVGKKMRAA
Ga0210410_1000022865F010184N/AMLTELFRRASLALRGRYVRMLEEEVTRLRGENRALVNSLLGTAGFPPIALDDDVRRGPVAMSPVRRRTWTQIARDREVAAAKSAPNK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.