Scaffold Ga0210410

Basic Information
Taxon OID	3300021479 Open in IMG/M
Scaffold ID	Ga0210410_10000147 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	104628
Total Scaffold Genes	95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	84 (88.42%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

104628

Total Scaffold Genes

95 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

84 (88.42%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003015	Metagenome / Metatranscriptome	513	Y
F004329	Metagenome / Metatranscriptome	443	Y
F017551	Metagenome / Metatranscriptome	240	Y
F026067	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_1000014737	F026067	AGGGGG	MRLPTFLFALCLATMVAAAAVSSRQNGPELIAPPRQNVTAIQNNYDGSRMWRRAEIRVIPLEQAEWNRAALESLRTRVAQAERESAGLWLLDSNVHQQLSSQVQLMKELLTLAEQQQSNRGKSPNALAVERRLNQLQGQTMCEACHNGVVARNHGVGTRMAQSTE
Ga0210410_1000014748	F017551	AGGA	MSSKTATWIIAAGALMMFVGLCFLPGAFGEHPEADMLEIGAAQFSMGALVVAAGIYAKARVLQFAIASGEPRKDPAAASQRVRGGCDLCGSEAPVVQCKVHQLHLCGTCLAQHYDVRSCAYIPTTRTATNKAGRKLANARGA
Ga0210410_1000014759	F004329	GAG	MQTRVRRSHPGKQSAITFLAVLTALGLCAFQFGDRYGLNGMPFSQIQPLVSDLAKAQRMAKQGNIELHARQPVRGEAVTLRGELTDANCYLGNHTHGYDHAFCAKFCAAAGSPLLFVRDQGGQVYLVLNQLNGIRLPENVLDRIGVPGVVVKGRTLEADGLHALAVEGLSP
Ga0210410_1000014766	F003015	AGGAGG	MDRTKSLIAAVAFLLIGPGAVAQQSSTPPASTGNMSAPASNTSTVRGCLDGQRGNYIVVEDKTGLVYVLKGVGNKLDSHLHHEVEVKGRVRSGIIKTGVNPSKSGSNPSDTAHGVDGVPLEVADVQADVRTIAKHCKAADQQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210410_10000147

Overview

Ecosystem & Geography

Associated Families

Sequences