Scaffold Ga0210410_10000067

Overview

Basic Information

• Taxon OID: 3300021479
• Scaffold ID: Ga0210410_10000067
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 176482
• Total Scaffold Genes: 170
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 129 (75.88%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000092	Metagenome / Metatranscriptome	2385	Y
F033311	Metagenome	177	Y
F047848	Metagenome / Metatranscriptome	149	Y
F097887	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_1000006710	F097887	GAGG	MQTFDNGGKQIGRIDQSFSKDKSVTVHEIRNITTITVRDRSTGEVTTETLIGQSPFGTSE
Ga0210410_1000006713	F047848	AGGAGG	MMDYVHMFVLRTLCLDEDGEIRSRNVAVTFDMFEAEDHRNKGVENGYDTFVVPGNWREEL
Ga0210410_1000006714	F033311	GAG	MRELAEAFLAEGKTVRAAALMLNLIKTEPTPENLELLAEIYALQGLYEDAAVLYLRVVKMSLKMEPLHAEE
Ga0210410_100000673	F000092	GAG	VKQHLQRQSGVANVEVSLIDGKVDVTPKEDGQIEPAQLLKATYDSGVTVAELDMTASGKVVKDTSGNLSLQVKPNQSFVLAPNELSKGLEPLVDSATVVTVRGQLYKKPAGKKKADASAPLRLLILEVQKKE