Scaffold Ga0210410_10000064

Overview

Basic Information

• Taxon OID: 3300021479
• Scaffold ID: Ga0210410_10000064
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 178048
• Total Scaffold Genes: 185
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 147 (79.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000228	Metagenome / Metatranscriptome	1519	Y
F001851	Metagenome / Metatranscriptome	626	Y
F019709	Metagenome / Metatranscriptome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_10000064135	F019709	AGGAG	VKVYLKLACVLCIGALWRTTANMAFCYLFWMTTLAWAVRYIVRAKVKGGLFVLLGITCNALVTSLNKGVMPSVGMPATFQPAAPIWNVSGKGQWLTLADQAALYRFSIGDMFLIAGSLMFLISTVHRRFVVAPIKEGEPSIHSRYVVGTPEGQAWPDQEVTRHQLRL
Ga0210410_1000006415	F000228	GAG	MARGRKPSAALNTDLKLYLVPCSCGTTFAVSQNYNRQGTAWGRYLKCPQCGKRHDPKNRLLQLGFHREGYWRVDGC
Ga0210410_10000064184	F001851	AGGAGG	MNATSSFFGLLIVFFTILLLRRMRKLKPQTAGYGSQRMCPFCGLITSRLQACCLECGKSLAGVSVTPIMEK