Scaffold Ga0210410_10000003

Overview

Basic Information

• Taxon OID: 3300021479
• Scaffold ID: Ga0210410_10000003
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 610966
• Total Scaffold Genes: 560
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 432 (77.14%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000901	Metagenome / Metatranscriptome	844	Y
F001950	Metagenome / Metatranscriptome	613	Y
F002201	Metagenome / Metatranscriptome	584	Y
F003629	Metagenome / Metatranscriptome	476	Y
F005712	Metagenome / Metatranscriptome	392	Y
F006705	Metagenome / Metatranscriptome	366	Y
F057547	Metagenome / Metatranscriptome	136	Y
F097471	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_10000003159	F001950	AGGAG	MHNTKRQTILQLSVLMTSLFLCATAAIAQSNEVQSTPGAGKVLVHSKFGGQIFGFDIDQNSTEGVLSEALFQSNGNVLAAVETFNQKTGQILKVVSETQTQDDFITLGVVGNGVGLVEHEHVVKPLDVIRSFHTMNPLSSNKFTGLWTPPIGTQHLIEPAGVSRSQGEPNVAVFALDNSGNFIPWVFSSNVAANTFGPVVHITDSFNFGSVPPPMAYDSATNQAIMGGGDGCFGCLPVIGLVDLTAGTFSEFTGFGFGFVNGIAVDAADGIFCTTTEDDATVEFYTLSTQTGISVVLPNSGSQQIFSGADVEFDPIHKLFLIAQPVSSSSSQGSTIYVYTPNGELKETLNGFNFSNTFNVVAMHIALHPSQRLGYVDGPDSGVTEIQSFTY
Ga0210410_10000003192	F057547	GGAG	MGRPCAAVACSFIALAAWVRQLPFWLLNSCVVTECLQRGHLKVVNPPMVLMV
Ga0210410_10000003320	F005712	AGGAG	MKSIRRFVYAGVLMLSALNFTPTLACAQDATGTFTLTHEVRWQNAIVPAGKYRFTLGPSGPSELLMLSKISGKGAGFMMMVTETEDSKPSDLSQLVVVSRPGGSFVSTLQLPEFGVTLHFAVPAEPRELAQSVATSSATQTASATR
Ga0210410_1000000333	F097471	GGAGG	MGSVVQNANRLIANTSSASGWRMVLLVSFMLMLGPAYLHSQCPDNGQTKVIKPDKGTGYYFYMFLGDSSFRYFLDGKTFSFNDKDDPGKTIIFIDNMAYESIVKDKDWDEIKKYIKGPKAEDILRAEAKQHQDYHKSVIPSMVITDFGISSDKNPDGSEGRAFYLWKKENPPGKEAATQYFCSTVVKNGVVVLSIMLIRPSVSEDDVFRQLREYTSHFDLLSSEKCKQVLSMPSAP
Ga0210410_10000003450	F000901	GGAG	MAVNTAAAYGIYSQDVALTDIVRTLNQAGFENESICMMLPPGHPIASVVREASLFNAEKESSVVTAGLIGWLSKFGAVLIPTVGFFIRSQAFFHALMVAREAPALCGNARTLVGLGFSEEEAERFEDQLGNLGVLVYVSCEEGAKTLWAREVLRHTGAWEAATLGERMGTVAVA
Ga0210410_10000003486	F002201	AGGGGG	MWINEVAPERLAELFHHYHQALAPEISGKGSEGQGSWKEVPEPEKSRLVAAARLALLELESMTSERAKSRQYFAQPGEAEWGC
Ga0210410_1000000352	F006705	N/A	MPYILEHLTSLRQEITDLRNLNARSAAKTTDSQIDQSAVEMRANRLLEIKKELSQMLNRPEDPRVWWEKGGRRNRVA
Ga0210410_1000000364	F003629	GGA	MKLDPLLNRRIIFKLHGMDPLDSTILKQDATGYWIRGGTLAPHLDKSNCSLPQSDVRYLEFTRIEWLRASRQRP