NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210398_10889162

Scaffold Ga0210398_10889162


Overview

Basic Information
Taxon OID3300021477 Open in IMG/M
Scaffold IDGa0210398_10889162 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)714
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041070Metagenome160Y
F062008Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0210398_108891621F041070N/APDNFAIDIMLAAMAGAMRSLLEAGPTPATVRKSREQLVLLCQSYMAAATATRSRRGFWPPVSDVGSD
Ga0210398_108891622F062008AGGAGMKLEEYDFTRNPIVENQTFFLESKCVHCGLAVLGSSLEELLKEEDRHRAQCMLKRAA

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