Scaffold Ga0210398_10000172

Overview

Basic Information

• Taxon OID: 3300021477
• Scaffold ID: Ga0210398_10000172
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 80247
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (90.14%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006807	Metagenome / Metatranscriptome	364	Y
F007233	Metagenome / Metatranscriptome	355	Y
F033134	Metagenome	178	Y
F037842	Metagenome / Metatranscriptome	167	N
F037877	Metagenome / Metatranscriptome	167	Y
F044617	Metagenome / Metatranscriptome	154	N
F065986	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210398_1000017214	F044617	AGGA	MNASPRESRQMPTATAMTAEERRKLDERIRDKQQKLRNKYPEIYGKVVDWIHHSVEDGTLYICIRFQDKTDFALEFSPQIVRVGTELCDSATGDFDVIRNYYQEEHE
Ga0210398_1000017215	F065986	GAG	MICKRKEVRFGSVHIDLIGPTELLHNREAKGAAIDFLRTEILASKDWLKDCAKISPSLKRFRLISIRTQNRLKV
Ga0210398_1000017216	F037842	AGGAGG	LKQKTRKAKGEGVEYPALIGKVTRQVRFVNDEDYTALTIEFDDSTLVSFRFKASIAFSIDPELSTVKGGNIVRWRELKTRPVLRRVARK
Ga0210398_1000017217	F033134	AGGA	MEQEHGSKQLITFNSLHIEVLGPRALGNSQPAIRGVTEFLHAVELDVRNLLRERAETSSILEGFRLRFG
Ga0210398_1000017218	F007233	GGAG	MANRKQREHHRRLNQDTFSDGIKGKVLEAVSISNELECRYISLEFEDKTELTISLDTRLTGKLELFDCKTGDHKLVCKIGLIPDDAPVWRPKD
Ga0210398_1000017242	F006807	AGGAGG	MRRIIVAIALLANLIVLPGCKKQVACDPADSDEVCKAFQQCLRSDTSAEVCRMGEQDANKLEKNKKH
Ga0210398_1000017249	F037877	AGGA	VLNVSSTFVGGFEIGNNLDRAEHSAQAVLHIAEVQGTAQIWWRFGGGSDRNRALLGNKDNSMHGMQIAQSRVNTGDCASR
Ga0210398_1000017259	F037877	AGGA	VLSICSGFVGGSVQVGYKLDRPEQSVQVDSHMAQVQGEADIWRRFGGGSDRNRALLCNEGNSMHDMQFVQRRMNTGDYASR