Scaffold Ga0187846_10000548

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187846_10000548

Scaffold Ga0187846_10000548

Overview

Basic Information
Taxon OID	3300021476 Open in IMG/M
Scaffold ID	Ga0187846_10000548 Open in IMG/M
Source Dataset Name	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	21757
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (78.26%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm → Microbial Communities From Various Locations To Find New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Brazil: State of Minas Gerais
Coordinates	Lat. (^o)	-19.8881	Long. (^o)	-43.6761	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F104927	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187846_1000054813	F104927	GGAG	MDEDEARKTLKVFGLQVTQFIDRRRELKSLAVNAIEGQDRTTVAAVLAALVTETSELHRRWLEVTNLVLEEERDAYSEMARLLEQAGQAELPRAEA

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