Scaffold Ga0210390_10102550

Overview

Basic Information

• Taxon OID: 3300021474
• Scaffold ID: Ga0210390_10102550
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2389
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis algeriensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006905	Metagenome / Metatranscriptome	362	Y
F013663	Metagenome / Metatranscriptome	269	Y
F014996	Metagenome / Metatranscriptome	258	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210390_101025502	F013663	AGGCGG	VIHTRPDRDGQEQLRLLAAAREEAARYWQDEVARQFDAGRWTPLVQQSQAYLEALGALMDLLETAERDTEF
Ga0210390_101025503	F014996	AGG	VAWSGSEGTNKVHADIDALNGFHEALVRFRHVQRSVAERSDDEIEMTRASLAAKASHWQARLEQSQAEFDACRAVPGADCSGYARAVEQAGEWLEHIRRWQQRVDEAAGEFRGTAGAFWDLLQNDLPRAESLLLALIADLEAARRAS
Ga0210390_101025505	F006905	N/A	PAAIGTAIDALRAVLLEVPEDYPDRNREVNRFLPPLAASVHAIMRAQEIAIPYGSRLEHIAAGGVAKYPDIVKLSLDEIAAEFEGLCNRPGNE