Scaffold Ga0210390_10024530

Overview

Basic Information

• Taxon OID: 3300021474
• Scaffold ID: Ga0210390_10024530
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4912
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F002560	Metagenome / Metatranscriptome	548	Y
F011010	Metagenome / Metatranscriptome	296	Y
F047830	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210390_100245301	F047830	N/A	DLDDRKRPKTVPKLGGWATPEGWRQGLRPTAEVASRLSERTTAVNHGNGDGPDSGKWANDRDASLVREIEQMERLVGKRMYRGLLKTVARVWNPMDIQDPAIQQKVLAHMQAAERGFRRLDAAVENVSPEALTRILRSLNLQSIDRVDHLQTLLDIVLALEGAAQEEVAKQLDLAGQ
Ga0210390_1002453011	F011010	GAG	MKSAHLRFGWLTYVKSTEKTTTSIKLRLDRFIGEVLPDPPRQAK
Ga0210390_100245308	F002560	AGGAGG	MIAPNPPPSADVGRPPAISLPIALYVSGELIFELYDGGQPCRRFSIRWERLVPAKEREPEAAALSSQTGLRTHQD
Ga0210390_100245309	F000208	GAGG	MRIRVTTRADLFEERKQQHIERGYRIEDERPIPVNGFCSFIAVSEISDSDGISDFVARALNGVAR