Scaffold Ga0210390_10010410

Overview

Basic Information

• Taxon OID: 3300021474
• Scaffold ID: Ga0210390_10010410
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7594
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008518	Metagenome / Metatranscriptome	332	Y
F010569	Metagenome / Metatranscriptome	302	Y
F065983	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210390_1001041011	F008518	AGG	MWMEKLSFGVLRVLTPLGPRYLNPSFAQRLYLLWIFRNFETLPVKVLSQRQQRWVDAMCASHGFVSVLEPNGLMDTPLLGTLEQRPPVAPPRRPDRSVSEAVSPFAADSQRS
Ga0210390_1001041012	F065983	GAG	MKKRLTAQEKLYVERRREHNRKHTLLRRECYKWLRKNLPEVYEKLRKKAGLAKTGRPKD
Ga0210390_100104104	F010569	GAG	MVKALSAKGVARAPRVKLAGTVLSLVRLENGRQTRGKLHQLSITGGLLHMEMPLDEGIKVELIFHVGESTVRTPARMLFPMWATQGCLQPFEFSGLDEEDRCNLRVDLEKLLDGSGTASVPAQEEISEASPDS