Scaffold Ga0210390_10001612

Overview

Basic Information

• Taxon OID: 3300021474
• Scaffold ID: Ga0210390_10001612
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21282
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (74.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005124	Metagenome / Metatranscriptome	411	Y
F007233	Metagenome / Metatranscriptome	355	Y
F015917	Metagenome / Metatranscriptome	251	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210390_1000161224	F007233	GGAG	MSKRKQKRHERKPNLDTFSDGIKGKVLDAVSITNEFESRYISLEFQDQTELIITLDVRLTGKLELFDCKTGDQRLVKKIGLVPDDTPLWRPKE
Ga0210390_1000161225	F015917	AGGAG	MAKPKTIRVGNITVTQISPKEREILAQKIKKRHDRLRNRYREIHKKIVDWVSHSVEEGSVYVCIRFMDKTEFSLQFSPQILTDSIDLSDMSTGNVKMLREYYPRRDE
Ga0210390_1000161233	F005124	N/A	VALRTCTVAVKDLRDIEHSIEVSAETLYEAIATALAALQQDSWVGEIGQGFTTVTVIVQQPPVKHEVKMNDFVSWLRRQGRSPAEVLLKQKLEKILGKVNHPRR