NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210390_10000001

Scaffold Ga0210390_10000001


Overview

Basic Information
Taxon OID3300021474 Open in IMG/M
Scaffold IDGa0210390_10000001 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1088388
Total Scaffold Genes967 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)713 (73.73%)
Novel Protein Genes21 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)17 (80.95%)
Associated Families21

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000214Metagenome / Metatranscriptome1570Y
F000522Metagenome / Metatranscriptome1055Y
F000655Metagenome / Metatranscriptome958Y
F000850Metagenome / Metatranscriptome861Y
F001701Metagenome / Metatranscriptome649Y
F002248Metagenome / Metatranscriptome578Y
F002358Metagenome / Metatranscriptome567Y
F003216Metagenome / Metatranscriptome500Y
F005153Metagenome / Metatranscriptome410Y
F005538Metagenome / Metatranscriptome397Y
F009088Metagenome / Metatranscriptome323Y
F009817Metagenome / Metatranscriptome312Y
F014166Metagenome / Metatranscriptome265Y
F014422Metagenome / Metatranscriptome263Y
F016697Metagenome245Y
F022762Metagenome / Metatranscriptome213Y
F022838Metagenome / Metatranscriptome212Y
F023655Metagenome / Metatranscriptome209Y
F025076Metagenome / Metatranscriptome203Y
F067023Metagenome / Metatranscriptome126Y
F071005Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0210390_10000001236F002358GGCGGMPVFIDDARTSDKRANNPRTVETQTSEESQGSGQQVPALVDLLRNRSYAEIRQRMYDKEPGSPWWAACRAELDLRNGQQLGEASLALSRTSEKMRASVQHFEQLADTLHQATVDIADLLRGSQEAARRLEIAVYVAIGITLVQVFNLVFEIFRKH
Ga0210390_10000001344F000214AGGMKNVYEVLRQKEMELTRLEKEVEALRLVAPLLSEEKEMNSDMLKPTLATAVNGPQQPIRIPAPQVTVPAAQPVRAAGWDDSAKRWP
Ga0210390_10000001350F014422N/AMSIKLLPAAVTPVDPPQALDVSTSLVPLTQRAITTTQRAVPTRAGQISLVPSADAFAWSSSTRQGGANRIYGTFVDDSQSDEMGRSGGEYVSGWPWSYSVGRTAIAHYLFYATDPARWRGRLINLYA
Ga0210390_10000001397F071005N/AMAWPAIPDPLARLKVLLDSSTPIVVMETIEETRAVRLVRAACAALNLAAF
Ga0210390_10000001509F000850GGAGMKKPELTGTGWLGPRDEMDRASHRFGKCSECNEIICVEKAVADGPITQRETSKMLSKAFDTHVKLNHPENYNKAASLTTNNYDT
Ga0210390_10000001522F022838GGAMEHSVEELQTEFVNLLQKQVEALELDAYVGLTDGEWSEYYRRQERISDLDAKIRLCYGAA
Ga0210390_10000001524F009088GGAGGMENGRVEELRGELTCLLKKQAEVLESRTFGAASEVEILEYEIRQEVIHEICAKLANPAAA
Ga0210390_10000001526F003216N/AMPLKNAALLALIGTILMTIVLVWNFVLTFLNVLRDLVPAVTLFSSLIYAFGVFSVVVFFYVFHRAQS
Ga0210390_10000001585F005153GAGGMHIFHISYRNAQGALMRILNAISKRGIDLPSVYAEAAGQDHAVTLTLEVSQKQIGQLSREWYAIVDVIEVRSSAWLREHEEHAAQWGPHPPASATAAERSARAALA
Ga0210390_10000001614F014166GAGMDRMPCFSKKLLAHHCVVLILLTAALSGAAGAQTPHKKTSAQNDAESGAPTNVQQELVRIETGFFEAWKTQDQSYFREHMPESGVFWGESGTLSRDQQLAEQLDTAKLCTVEGYGLSDFGVLPLSSGTYLLTYKAEQYVNCGGSKMPVHMNGSSVYILKSGHWQAIYRAEVPLKNQS
Ga0210390_10000001634F016697GGAMERRNVHGACRVGAVAVMFLFSLSVAIRGEAQSSGQQEQRTPVGPGSTIVHSKFGGQIFGFDIDQNGTEGVLSEAQDIGGGKVLAAVETFDQKSGKILNVVSKIQSKDDFLTLGIVGTSVGLVEREHVTGNFVTKRVYEELNPLSLNEFTGTWTPPLASDDIIIGVSRNQGSATTAVLAFHNDGNNFSSFVFGSDVRANTFEPLITLTDPVFSFSEEPQIAYDSTTNLAVVASSDGTVGGPPPVLALVDLAAGTVNEFKGIPGPPPFRQGSINGLAVDSEDGIACTTTEVDFRVEFYDLKRKTGFAVILPGASGQLQSGSDVEFDPVHKLFFVAQSVSSTGPGSSIQVYTPKGKLVESLNGFNFSNASNVVFTHIALNPSNRSGYVDGPDSGVTEIQSFTY
Ga0210390_10000001637F023655AGGMIFGLVFALIIAAPLQDNSVESQATMQQQAHDAYERHRQAAIRINDLAARIHSQADADAMISEIADLFNKELPPVWALSIIRQRVAHAEFEAASNPTKLIPEQRVADVWNQYAREIGAPDEAIVSVAEIHNMRDAQFTAAQMMWARGHQTIWSMPNVYALGSDGKVADGCRALDAIHVIHDLVGLFQNLRAARERLRKGIVVSDKIKKPIGELKSQARTVGRLGAQADSNPIRPAELRYLQDHGSVAYDLLLVRLFDELFPGE
Ga0210390_10000001754F022762GAGMAKAKKFELESPAPIIDEETLATIDEGIQDANAGRSIPAEEVRKRLPKWITAY
Ga0210390_10000001759F000522GAGGMDHHEAVRKFEYLMLKEADHAREVATELEALVPILTTENSRQLAQIQIKASHKLSKEFRELAEKIKEK
Ga0210390_10000001775F001701GGAGMSSTGFLYAAYIATWLIHGVYIGMLARRYSRLRHQIKELRKGE
Ga0210390_100000018F067023AGGAGMTPDERERRAILCQRIATEKNPESFDNLVQELNDLLEIKRKRIRPERGTQPI
Ga0210390_10000001805F000655N/AMIWWFLILGVSTLVVVCVAIAVYMRLRRHLREAQAAREGSSGGVGGGHQSGDIEH
Ga0210390_10000001826F002248AGGAGMDRRQQSRVFVDLPVHIWGMDANSRPFTQPASLRTISGRGATLQCVDAHLKPGDVVDVLYEGTKAQFRIVWCGKPGTEMAGEVGVENLSVDTRLWDIDPLRCAAAVGQG
Ga0210390_10000001880F025076AGGAGGMDRSARLHLVARITYYVGWLTLLCGGLVHLNIARTLFMSMSLTKRNLFEVSVTCFVICMASEIRVLASTGKSSAAL
Ga0210390_10000001882F009817AGGMNWIRTIQPKAAIVLVVLGLCHVAVCQQVSAALLHPSMIEAPSFEPAPMVRLAPVTLPESPVQHRFLDRENSLLFATSAAFSAADFVVTRDNLRSGGRELNPITSWFTGSTAGLAVNFAGETAGVVGLSYLFHKTGHHKMERAVSMLNIGASAGAVAFDLAHR
Ga0210390_10000001914F005538GGAGGMDFQVHEQTYFLSLAEDEKQWLVFVDTPTGARPIPVYVDAPELRSSVLVREEKQRIPN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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