Scaffold Ga0190361_1012308

Overview

Basic Information

• Taxon OID: 3300021469
• Scaffold ID: Ga0190361_1012308
• Source Dataset Name: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-4-5_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2980
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5956
  • Depth (m): 2011

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050821	Metagenome	144	N
F057027	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190361_10123084	F057027	AGGAGG	MAKKWDRGVFEEARREVEEREKRIGFLFPPKNRGEEIHIEILDDTFTQVYEGETGLDDRTVDWTQPQILVRDLKDDRKKAFKLNAGLATQMWRVVENAGGDPLNMQGSVFTITGMGNYNYEVVYRKPAKEPEIVDENKIEEIVKKVMSSGDKSKEEILLWVKEYLKVEGVQVSDVVIKSVVDRVVG
Ga0190361_10123085	F050821	GGA	MIVKDMYCDYCKQETLHECQSNELWRCVQCQNTRFEIINIPQNEIDWEKPVRYLWRSGDIAYVTSALAPIILRLDEMKELLEGRRIRIPLFKIKDKFLPKYC