NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182009_10092201

Scaffold Ga0182009_10092201


Overview

Basic Information
Taxon OID3300021445 Open in IMG/M
Scaffold IDGa0182009_10092201 Open in IMG/M
Source Dataset NameBulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1368
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location
Location NameUSA: Nebraska
CoordinatesLat. (o)41.1613Long. (o)-96.6752Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F065748Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0182009_100922011F065748N/ASWPLVYSSLQALKGHVQEYPGCQRLEAFVQVEAEGAVRVHCYTTWDTPEQLEAFMERGYTFERMLHDVAELPIERTYVMEKVF
Ga0182009_100922012F000280AGAAGGMAGERRPARPLFGYRDVGEDVRHSRRATSRAWIILAVLVAFYLGWTLIVYFLEPGLR

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