Scaffold Ga0182009_10009864

Overview

Basic Information

• Taxon OID: 3300021445
• Scaffold ID: Ga0182009_10009864
• Source Dataset Name: Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3270
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location

• Location Name: USA: Nebraska
• Coordinates
  • Lat. (^o): 41.1613
  • Long. (^o): -96.6752

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000801	Metagenome / Metatranscriptome	886	Y
F094204	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182009_100098642	F000801	GGAGG	MEAQEWTVRQLIETLKKFPPEAKVFYEMGPNGAGTIGKAQYVKARGDDDELGVLLDR
Ga0182009_100098646	F094204	GGA	MTYVWFESYEAVALETDWLKMHERIQSAESKIEDRKRVLSQDHGGTPEERQAIANALNALGTLRTEVDDWQSRQAAEAVRCRDDH