Basic Information | |
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Taxon OID | 3300021443 Open in IMG/M |
Scaffold ID | Ga0206681_10000379 Open in IMG/M |
Source Dataset Name | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 24780 |
Total Scaffold Genes | 36 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (33.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 36.7468 | Long. (o) | -122.0193 | Alt. (m) | Depth (m) | 500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F019648 | Metagenome | 228 | Y |
F032280 | Metagenome | 180 | Y |
F046021 | Metagenome / Metatranscriptome | 152 | Y |
F050380 | Metagenome | 145 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0206681_1000037912 | F019648 | N/A | MTEKELNLLDRFASKYKIDCVPSEGKYDFWDFTYKWDDRKFYCEMKQRNFSLDFAKEKYREGLLLEMHKYERILRRTKNEKAAQGLYINFFDCDSVLVFNLNKTKIDNWVWRTMPESTEFGRKSFVYKYVTFIDYSKGKVLYI |
Ga0206681_1000037913 | F046021 | N/A | MVKKKLTPKYNDNKAIKEKIDRLLKENASNVANSNTGSRLDIGDDDSVKEAWGIIQEKIKAIDPMFYEIIKER |
Ga0206681_1000037928 | F050380 | N/A | MATEKRPGGTNTFGIRVIGIQDVQKKLKKLGLTAKRSRTEINKALRPAGTKLARGMQQAYKDEFNRSKRKRKSGRVPTYKTIGVVTARKSREPGLFVGPIKRRATPIRVHGKNSYNLAEMQIVGNKFQEPRKDIFLATAIKMEGVVLLQAEKDLDRLVEKMIKQAGL |
Ga0206681_100003799 | F032280 | N/A | MADEITIKAINLLRSADPNLDEMDSLDKFIAHQGEVIKMMDQYASFVDHPQAEKLKARLKVFEESALAFTWVHTMMLAYKREKLLANSNEMEMANAVIELKQELDILNQLK |
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