Scaffold Ga0206685_10004147

Overview

Basic Information

• Taxon OID: 3300021442
• Scaffold ID: Ga0206685_10004147
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4436
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6907
  • Long. (^o): -122.3448
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004418	Metagenome / Metatranscriptome	439	Y
F015611	Metagenome / Metatranscriptome	253	Y
F027651	Metagenome / Metatranscriptome	194	Y
F047304	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206685_1000414710	F004418	GAGG	MKKFLNWLKDDWMNHRFRLFCESIGSICFIAIYVLMAWYGESVSILTIFLIQIVGSTLHIINAYLRNSVNLIALNCIVIAIALFGLAKMALSV
Ga0206685_1000414711	F027651	AGG	MRNKDKSNKDLKMNMKQKVKKMNLKWEVIGLSNAINKNYHSWLSCVCDNKEYTIESDKFGHGFGVFHGSKYFRIEASGKSGCNGIIDQKNSKMFSPAHKDKHVWGFVVKKDFENHKSGDILTRNYEKVGNVLNGNTANLGMPNSHYPNYTDCWAGADIW
Ga0206685_100041472	F015611	AGGA	METTYKEFMEAKVKSWADMKDRNVLRDAEKHKKRMKRGQVLGYTLAHDEFTIFHNEKEWNEAVKYAKDMKWIRVD
Ga0206685_100041476	F047304	GGAG	MEIKPQYFGAVITSNMVTEKELKRIKKEGGFVKGPTRKAKGSKNARWGQTR