NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1006167

Scaffold Ga0213920_1006167


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1006167 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4230
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023321Metagenome / Metatranscriptome210Y
F024533Metagenome205Y
F047012Metagenome / Metatranscriptome150Y
F057311Metagenome / Metatranscriptome136Y
F081259Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0213920_10061671F047012N/AMKRLLFFVIASLMAVAAHAESYRLPFVELQNGPTKIPFVEQEWVLGAERADWLLYLEKGMFSKPNQSMYEFHAATIYKKPYHSDGLSADVSKIYTYGVMNCNEANLYILFEWYVDVDENLIFKASHEYGAYTVELLTPFTARNDVYNQICKDSI
Ga0213920_10061675F081259AGGAGGMIKKMIEWFTRPQIHEIEQYISDHEPKTAADVDKLINEFNYKRKLQCF
Ga0213920_10061676F023321AGGAMFLNQPQFPVFYTFNDISRKAEEAAVKTIDFNKQFFDNTIAYFDSITDNQFTTYTKKVSTFNQNVAEDAKKIVKSESTTKAKA
Ga0213920_10061677F057311N/AMQRKSSKVSQQQKLRLEIEAKSKFWQPVSRNGWWIKFSTYRDHYILLMIVSKYTAQTIIRYYEDESEAVAFINFITTCNPNDLIESA
Ga0213920_10061679F024533GGAMPIQKTCPTCKVTHSKRGPYCSRSCGNIRVHTEEDKAVRSQKLTEYHQTPEGAATREKASRITTALNKGENWDEVGVDDYAVGIPDVTDYSADFDYTWDRAEKW
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