Scaffold Ga0213920_1000362

Overview

Basic Information

• Taxon OID: 3300021438
• Scaffold ID: Ga0213920_1000362
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38378
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (88.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9255
  • Long. (^o): -83.5226
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025975	Metagenome / Metatranscriptome	199	Y
F048255	Metagenome / Metatranscriptome	148	Y
F051705	Metagenome	143	N
F098688	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213920_100036210	F098688	AGGA	MSKRELALDSLTRICEIQQRLINQLIALEETAYARGYADGMAAQVEIDINLEQLLKERKA
Ga0213920_100036242	F048255	GGA	MKQITITIGDDGQITVESSEGGEPYQCKSIDECRQYVDKMLAEEGGESPQEQATEGEEDYGQMWNQEAAQRKPQPGLMA
Ga0213920_100036243	F025975	AGGAG	MQDYGTQPSRNPIRAAGNPMKTGAAIGGGGNATQGAGTLPGKVSVPMPGTNATQPEYKSQAGSMKAPMGFNGGLIPGKI
Ga0213920_10003626	F051705	N/A	MKITTTFDDEGEAIQAIQAKHAWQALHEISEVLRRNRKYGLPFEEAVSQIQASVSDALSKVYQD