Scaffold Ga0213920_1000092

Overview

Basic Information

• Taxon OID: 3300021438
• Scaffold ID: Ga0213920_1000092
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 97868
• Total Scaffold Genes: 148
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 131 (88.51%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9255
  • Long. (^o): -83.5226
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005167	Metagenome / Metatranscriptome	410	Y
F008023	Metagenome / Metatranscriptome	340	Y
F064411	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213920_100009216	F064411	GAGG	MKLTGNVLLRILATFVASALGVIGAGSLGGVAPATAALVGGILAVAKVIERLSIAFLEDGKLSNAEINAAFQQSVQLKNVKEEEPKK
Ga0213920_100009232	F008023	AGGAG	VATQKTSPLDATGKAAEDAAKRNAEALKARAEEISVARAQETISLESDVFDPKKPDAPLLIDEVEEVGVSINNDTVIIRTITDIEDMTFGVGNSYTFKQGVRYKVPRELADYLQMLGYIWLN
Ga0213920_100009296	F005167	AGAAG	MAVNTSRSMNESLGEGATDGKYRKIRPNTQVLDLQGNEQVLDNRQSLHPFYGYGFATTEYQEKQNPGK