NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210391_10214863

Scaffold Ga0210391_10214863


Overview

Basic Information
Taxon OID3300021433 Open in IMG/M
Scaffold IDGa0210391_10214863 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1512
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025787Metagenome / Metatranscriptome200Y
F057521Metagenome / Metatranscriptome136Y
F101564Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0210391_102148631F101564N/AMDLERVRKELQAAALREFPNPERIGCPEPGVLDDMSRRKI
Ga0210391_102148632F057521GGAGMPIKPPPRTISASEGLSFERFSGVSRHAKETVKRLRTYLRGRQSVDAKSLVADAQTLTIREWNAALTEKPNTRKLVYLEPSSLEQRSYSRDDPFETVYGRELLSRLVAELPPEQVPYLDAFLAGEKPKEIAQRLGISAKAASARMRRFKAKVADLYRALPNKLGVMPTRDEA
Ga0210391_102148634F025787AGGAGMGARHAVRINAVWTSHSSAVLLDGIEANEQGKKLAEARLRALHPLCEGKDHHSTDFEKRLRKVFENGSADRVQPWLTLEFWQQEIDNVLVQAIFGRNGSKSSAVDRIHAVWEKLSPPSLLDRMEEVARAGLPQWVQNDFWAAEVDPILQVGIDRANRFQSEAVDRVLKSCSGLQIGAVWARVRALRNRRNGAPTVVS
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