NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210384_10052775

Scaffold Ga0210384_10052775


Overview

Basic Information
Taxon OID3300021432 Open in IMG/M
Scaffold IDGa0210384_10052775 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3687
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000586Metagenome / Metatranscriptome1007Y
F004122Metagenome / Metatranscriptome452Y
F006481Metagenome / Metatranscriptome372Y

Sequences

Protein IDFamilyRBSSequence
Ga0210384_100527751F006481AGGMNSVVETTVADSASAEAQLPSRVFEIKPEESKLVCVGADGREFALSRLVGSNVRIGDDVLVPASTGTATAETEVYIRKPTLRRADVYQVKAGYAALPKLDKREEPFVRVQVAEGHLGINAIHIPCPVIRDYFFAANRRASWPSQPTFYYVLRLPQDVTYKELRLAYRLRRLEFQKQNASKAELATIERAYNMLADPDIRGVYDALIKDSAIPVPFPYSGFGSLLVQGERSAESGVFFANRILAFMPERRRRTVPVP
Ga0210384_100527752F004122GAGMTDKGLSDTEHRSAEFRYEWHSFLGLLPVLDLRSMDLVLYQRCLTAVWRSRKSAISRTELQQVAGLAFKEGTLDFDLLVAQLVREEILEPIISSPFHFRIRRRNWTNPESAYSADDRQSLTAITREEQAGRFRVLGVLSTRISNLRLPEKRVQKIRKERGELERIYEATWLELENAIGSQAAEAIRKSVEETTEAGAVQLELQLEKKRTFDLEGEARCNQ
Ga0210384_100527755F000586AGGMNHADPNTMRARARQATEILKTQLLGTGTIEPLVALYFDDHIEQVEFQDPSVLEHFDVRTARSFDYLRTLVRIKNPQAAMITLDVRMGTFESDERDVLADTTAVFLMLDSPLLTIQVLLPYTRCGGSIAVSNVHYTEMPGDDGGTPCPLFKIFSDVPVAVC
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