Scaffold Ga0210384_10007298

Overview

Basic Information

• Taxon OID: 3300021432
• Scaffold ID: Ga0210384_10007298
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11670
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001128	Metagenome / Metatranscriptome	769	Y
F012080	Metagenome / Metatranscriptome	284	Y
F025102	Metagenome / Metatranscriptome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210384_100072983	F025102	GGAG	MNKTVEIVLIAIALAGMFCAIPKSSAPVGSPFDRAEQAVLVADGSDPMPLRRSVRK
Ga0210384_100072985	F001128	AGG	MKPTANEVGTAASWPPEEGQIIRFKSVGGLKTGTLKELRWGLVWRDFILEDGRVIPEHKILGCPEPPVWRKADEVTQDEREAWERRLVSMAETGLDPRDREQSFWADLNQYLAYTYLRFKQAGYKAPDAQ
Ga0210384_100072986	F012080	GGAG	VSRPYERSEKERVWKLLLEAGFTDIALDEFPERIKEAKQVVMGRLSELLELTTDIQERQSAAYSLAMLKKLETTVWRTGKHRSSD