Scaffold Ga0210384_10002240

Overview

Basic Information

• Taxon OID: 3300021432
• Scaffold ID: Ga0210384_10002240
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23963
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007325	Metagenome / Metatranscriptome	353	Y
F011862	Metagenome / Metatranscriptome	286	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210384_1000224023	F011862	AGGAGG	MLRPTVVSALLALATLASAQTQPAGKLDSTPDSALRIIDQIKRADYAGERAALARLHAELSVPAGDKTLASRVSYWRGFALWRRAINGFNETPTPSDLADDFKAAIVDFDNSLAQDPTFVDSKIAAASCYGYLLYLNMKDQARMQEYIEKGRPYMQDAMTTAPNNPRLLWVLGPYRWTAPPEHGGGQDKAFAVYNHGLDIIRKTPAVTDPLEPSWGEPELLMNRSWSYLHQTTPDLKAAQQDSEAALAI
Ga0210384_100022407	F007325	N/A	VIAAFAFVAIAANAADLTVEELKAKLASANVGDRPHICIQIAQQQLAETNRLYAAMDVEKAEAALTDVVAFSELARDYAVQSHKYQKQSEIAVRAMARKLTDMEHALPHEDGAVVRRAIDRLQRVRDDLLGAMFPKGSK