Scaffold Ga0210384_10001190

Overview

Basic Information

• Taxon OID: 3300021432
• Scaffold ID: Ga0210384_10001190
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36283
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (80.65%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005312	Metagenome / Metatranscriptome	405	Y
F009363	Metagenome / Metatranscriptome	319	Y
F023203	Metagenome / Metatranscriptome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210384_1000119015	F009363	GGAGG	VAVRICPHCKTEISAPEAAARSNDMECPKCGTRLEVAPGSRTISTLCGLAAGAITWHLSSGSTSDLGAVLPTLYAFLAFGIVSPLVLMFTANLRNAPAAPVPEPAHAPASAGHGPGDHGGGHH
Ga0210384_1000119016	F005312	N/A	MARYSAILGRRIVVTYRAGEIALPATGQLAADSGKSIFLEESYRQQGKIKTFRWEIPYPSIVELHECPEIPRPSASVNEPREASAESARQRNTLELKNRLA
Ga0210384_100011902	F023203	AGGAGG	MFDFIINNSKNSRRKNSVPRPSLYCVWFRAHEGENAPLIRVWIDPSMSMFESQAKVHEPDLAAAQDEVQAALAHENNS