Scaffold Ga0210384

Basic Information
Taxon OID	3300021432 Open in IMG/M
Scaffold ID	Ga0210384_10000009 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	317800
Total Scaffold Genes	330 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	278 (84.24%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

317800

Total Scaffold Genes

330 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

278 (84.24%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011237	Metagenome / Metatranscriptome	293	Y
F016425	Metagenome / Metatranscriptome	247	N
F040746	Metagenome / Metatranscriptome	161	Y
F069189	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210384_10000009212	F069189	GAGG	MPEYNFQLRGWHALVGIIVLAGFAGMQIWLRVRTVDDGMRVAVRVELMNEYSGRGPKDIARLLTEARAGSPVQQVPEVVQRDVEFTSIAAHGRMGGPVTVVRAEVTVDGASPPDGRQVRYFRVARKFMGGGWMVVGESDSYLYYRELLP
Ga0210384_10000009219	F011237	AGGAGG	MNIADFRNRQDLATFLAAVALAVSLAAFCHSTSPNLLAQENNDSWKSERQYPPLVFTGSSWLDCSISSTAPGRQIMTTTSGQGFTFDATMLPIHNGRLQLLGQTGMMYKFDSFPTSAVKAHFTGLGDGMITEMKSEVEVSVARFKQPAGAGTAIHFTAADIAADSAYVEFTGVFVRTSDRKPFPFRVLFGRVRDGSGTVVPTNAAPDTMILRKQVTLGSVRFPVTVTTALYEAEENVAKLKLP
Ga0210384_10000009236	F016425	GGAG	VIHLNHVGTIGVHRTFSEGAPVFDVFFAPRINDSACNSRRFRALEELAEFLAFLDVREDMVLRTLDEIRAGRSALIPNVTLSDEIISGQGLDSTVTLNRRIN
Ga0210384_100000099	F040746	GAG	MTPEMPIDLSSSGMNSDLIEDLRKHTPQQLAELRLLLNAGLSDRPDYRRPGFFEIDGVANVYYVLRFPFGHKILLLAAWDRQRESVAGLVTYPYPEA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210384_10000009

Overview

Ecosystem & Geography

Associated Families

Sequences