NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213866_10019952

Scaffold Ga0213866_10019952


Overview

Basic Information
Taxon OID3300021425 Open in IMG/M
Scaffold IDGa0213866_10019952 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3998
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004603Metagenome431Y
F009521Metagenome / Metatranscriptome316Y
F027830Metagenome / Metatranscriptome193N
F055270Metagenome / Metatranscriptome139Y
F062678Metagenome130N
F098208Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0213866_1001995211F098208GGAGMSNTYTIKDVLKIGNLLDDGTNFKCNKCNESGEMTYQALPSKDFKHGFDYSCGHCGQWQLEKVTQ
Ga0213866_1001995212F009521AGGTGGMKYQIIINNGTLKGFIAFKGSCLATMQDKFKRLEQQGHELKLIREK
Ga0213866_1001995213F055270AGGTGGMKLLHNREFKYYDKNANSVDMVNYIKTVMANNFIEEVYSLCLDYPEQFKQALNEIKYLYSKELNSFVYPPSDFIKYKQGKEQLLEVA
Ga0213866_100199522F027830GGAGMNNMTFNTAFGKYSAHYRDQGFGGELPYISETHSRATGEGGYLLRDENDRHIAYVTKDGKVQA
Ga0213866_100199524F004603N/AMIFSININGNIVDWCYNLDCQDKQYHKTWIPKLRDIQIITKDLDGLTVSEVKKIILEDIQPDINMVKEHNNKLVRARRIGR
Ga0213866_100199528F062678AGGCGGMTQQDQNILKKLKRKYPGLPIVGSPKDWERIKKMLSKKDFELYKLITKRGK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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