Scaffold Ga0213866_10001477

Overview

Basic Information

• Taxon OID: 3300021425
• Scaffold ID: Ga0213866_10001477
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17424
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (39.53%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021974	Metagenome / Metatranscriptome	216	Y
F022879	Metagenome / Metatranscriptome	212	Y
F034857	Metagenome / Metatranscriptome	173	Y
F047660	Metagenome / Metatranscriptome	149	Y
F101032	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213866_100014771	F034857	N/A	LLKICWTNIMIRKFIKWFVTPSPKPIIEDVDLYAKIVELENRIANLEEENIETSNCVYELQNSIEAVDTRIDILSIEAFTKNV
Ga0213866_1000147716	F022879	AGGAG	MTHHVAHMDKMLFDLKQQYQAQITRLQNKISDQEQEIAKLKTLISLLSIEREYDC
Ga0213866_1000147727	F047660	N/A	MSYVQIPDFVFDRIINSLERGYDICQGVDYSSDEMEKSSEYATGYSRATIGSVLEDLKRYKYISN
Ga0213866_1000147738	F021974	N/A	MNNTNIVSEIYSYHTDWKEGKVNQMWIEQFGDEYKGYSYVAVAHNPRNGKTMEMSKPRTSYQETLKWVRGWCGTFCTLPA
Ga0213866_1000147741	F101032	GGAG	MSEFITISFGASEDVARLGWWNQKERFDNLDEAKQCGRRQLSKTGTFGYVVIEEGEDFWEVVDELGAPSSKVSITAKRFTYSVQPAQELSFV