NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213866_10001200

Scaffold Ga0213866_10001200


Overview

Basic Information
Taxon OID3300021425 Open in IMG/M
Scaffold IDGa0213866_10001200 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19513
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000919Metagenome / Metatranscriptome834Y
F023807Metagenome / Metatranscriptome208Y
F077003Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0213866_1000120020F023807AGGMDMVRLVDTKLKYRMEFTEQEKEIKDHIMEFQHQVKLNELRDKFQKCWDKQ
Ga0213866_1000120023F077003GGAGVVTLLLATTISCADALSIIHRLTKFNGLTPIQKSEIIQEVRKTIPFCPVTIKKDDK
Ga0213866_100012008F000919GAGMRFRDIEFRWSPGNNKYELVKWMPQKEDSFFKDPTCYVIAFFDKGKEGYDMRTIGNRFFEDKDAWVVGKYALEFLNDIFMIERQEEDNL

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