NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194117_10385128

Scaffold Ga0194117_10385128


Overview

Basic Information
Taxon OID3300021424 Open in IMG/M
Scaffold IDGa0194117_10385128 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015009 Mahale N1 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)645
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-5.7366Long. (o)29.9194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044915Metagenome153N
F046326Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0194117_103851281F046326AGGAMNKYQSEEYFSVLDKKTGRKLLDCGEELDALAMVAMDPQNRIYTRNQFLMGQ
Ga0194117_103851282F044915N/ATLVPYIKSASQQFNVPENVIAAVLYEEILHRKPVDVRTFGVAQLGLKELMIQGLPPRKELLDDDEVSVWLLTSKLRRLQNETGSLRDAIILHNGYYDYYDSVRKTAKDPKVLTLLSQHKHRSTILL

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