Scaffold Ga0210394_10001881

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10001881
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31198
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (87.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045238	Metagenome / Metatranscriptome	153	Y
F064947	Metagenome / Metatranscriptome	128	Y
F087521	Metagenome / Metatranscriptome	110	Y
F095822	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_1000188113	F045238	AGGGGG	MNETYDIFRDLAETGPIWIEAVQGLDSAKARLTELLEAHPGNYFIYDPLAAKVIASAVKSAQMNEPVTLAGRSRQY
Ga0210394_1000188119	F064947	AGGA	MDEVGSRTKNPATILHRESAAQLQPVAAQPAVLVATVDPVIRDSMRDLLQMYPLRTLWAQGVGEVRALLAKENVAACFCGFWLVDGTYRDVVRLLKRRPIEIPAIIVCEPACPNEYRDYLASLNIRAFDFICHPYRKTDLERILRATLSGRALSARLRGSMMDAGSGLDSQSGLR
Ga0210394_1000188129	F095822	GAGG	MDFGFDIFRTLDDGTPLWIKQVATLDDGKQYLDELISATPAQYFIRDASTGEIVFRSGSIPPA
Ga0210394_100018815	F087521	GGAGG	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPARSRPRHQICPFCESAFAPERYYVTESGAPLAVSGRTIEIQDSLRAFTKTA