Scaffold Ga0210394

Basic Information
Taxon OID	3300021420 Open in IMG/M
Scaffold ID	Ga0210394_10000950 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	50942
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (78.18%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

50942

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (78.18%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002139	Metagenome / Metatranscriptome	590	Y
F002410	Metagenome / Metatranscriptome	562	Y
F003445	Metagenome / Metatranscriptome	486	Y
F018873	Metagenome / Metatranscriptome	232	Y
F025531	Metagenome / Metatranscriptome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_100009501	F002410	N/A	GQVPSLKLNANLMKLAHFNDLGPAKNDPSSFNLITTDLELADERISSRLIDIDGYGVDVDGSGSVSVSGSDELNYRGLAEITTKESFFTNTVARISGATLVDGKLQFPFRIGGTIDSPVFSKGKGDKDVDAPQNHR
Ga0210394_1000095012	F025531	AGG	MNSRDDQGPERDVRERIVNRLQSIGKGPRKQIPAEELQKLKSAASRLDQMLKAAANADQQALKSAAKLDLLLSDIRAGKDVTRNLKRRENSGTDKNEQA
Ga0210394_1000095013	F003445	GGAGG	MAFPDDVPTVHQGDRSIQLIDWLVGRLEECLGEVLPLQTDDLLKDYAKDARNSMASAIEQLNRARAKKERQLGGRTS
Ga0210394_1000095037	F002139	AGGA	MTNRVSYAPQDFQKMCKQAERDHESKKLVVLMERVKRQIAERENPGLKTEISKVVSTDSGFLRLPSRSAPFER
Ga0210394_1000095045	F018873	GGTGG	MSTPLLGLPLSALPSKLKNKRVLLVDTSASKRDLRAESMRKLGMHVDCAADIGEARSWWRADLYGLVLIDVESALGHRDKFCDDMRNATPPQQISFLVGGPGYLADLPNADRVPVVQTGRDQASWADVKTALAADLPGGVSQRWGILEASRRISAVRSLSHARTRATQDRPVPPRDLETREVKRAAQSRTLDDLLREELQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210394_10000950

Overview

Ecosystem & Geography

Associated Families

Sequences