NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000950

Scaffold Ga0210394_10000950


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000950 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50942
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (78.18%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002139Metagenome / Metatranscriptome590Y
F002410Metagenome / Metatranscriptome562Y
F003445Metagenome / Metatranscriptome486Y
F018873Metagenome / Metatranscriptome232Y
F025531Metagenome / Metatranscriptome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_100009501F002410N/AGQVPSLKLNANLMKLAHFNDLGPAKNDPSSFNLITTDLELADERISSRLIDIDGYGVDVDGSGSVSVSGSDELNYRGLAEITTKESFFTNTVARISGATLVDGKLQFPFRIGGTIDSPVFSKGKGDKDVDAPQNHR
Ga0210394_1000095012F025531AGGMNSRDDQGPERDVRERIVNRLQSIGKGPRKQIPAEELQKLKSAASRLDQMLKAAANADQQALKSAAKLDLLLSDIRAGKDVTRNLKRRENSGTDKNEQA
Ga0210394_1000095013F003445GGAGGMAFPDDVPTVHQGDRSIQLIDWLVGRLEECLGEVLPLQTDDLLKDYAKDARNSMASAIEQLNRARAKKERQLGGRTS
Ga0210394_1000095037F002139AGGAMTNRVSYAPQDFQKMCKQAERDHESKKLVVLMERVKRQIAERENPGLKTEISKVVSTDSGFLRLPSRSAPFER
Ga0210394_1000095045F018873GGTGGMSTPLLGLPLSALPSKLKNKRVLLVDTSASKRDLRAESMRKLGMHVDCAADIGEARSWWRADLYGLVLIDVESALGHRDKFCDDMRNATPPQQISFLVGGPGYLADLPNADRVPVVQTGRDQASWADVKTALAADLPGGVSQRWGILEASRRISAVRSLSHARTRATQDRPVPPRDLETREVKRAAQSRTLDDLLREELQ

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