Basic Information | |
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Taxon OID | 3300021420 Open in IMG/M |
Scaffold ID | Ga0210394_10000950 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 50942 |
Total Scaffold Genes | 55 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (78.18%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002139 | Metagenome / Metatranscriptome | 590 | Y |
F002410 | Metagenome / Metatranscriptome | 562 | Y |
F003445 | Metagenome / Metatranscriptome | 486 | Y |
F018873 | Metagenome / Metatranscriptome | 232 | Y |
F025531 | Metagenome / Metatranscriptome | 201 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0210394_100009501 | F002410 | N/A | GQVPSLKLNANLMKLAHFNDLGPAKNDPSSFNLITTDLELADERISSRLIDIDGYGVDVDGSGSVSVSGSDELNYRGLAEITTKESFFTNTVARISGATLVDGKLQFPFRIGGTIDSPVFSKGKGDKDVDAPQNHR |
Ga0210394_1000095012 | F025531 | AGG | MNSRDDQGPERDVRERIVNRLQSIGKGPRKQIPAEELQKLKSAASRLDQMLKAAANADQQALKSAAKLDLLLSDIRAGKDVTRNLKRRENSGTDKNEQA |
Ga0210394_1000095013 | F003445 | GGAGG | MAFPDDVPTVHQGDRSIQLIDWLVGRLEECLGEVLPLQTDDLLKDYAKDARNSMASAIEQLNRARAKKERQLGGRTS |
Ga0210394_1000095037 | F002139 | AGGA | MTNRVSYAPQDFQKMCKQAERDHESKKLVVLMERVKRQIAERENPGLKTEISKVVSTDSGFLRLPSRSAPFER |
Ga0210394_1000095045 | F018873 | GGTGG | MSTPLLGLPLSALPSKLKNKRVLLVDTSASKRDLRAESMRKLGMHVDCAADIGEARSWWRADLYGLVLIDVESALGHRDKFCDDMRNATPPQQISFLVGGPGYLADLPNADRVPVVQTGRDQASWADVKTALAADLPGGVSQRWGILEASRRISAVRSLSHARTRATQDRPVPPRDLETREVKRAAQSRTLDDLLREELQ |
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