Scaffold Ga0210394

Basic Information
Taxon OID	3300021420 Open in IMG/M
Scaffold ID	Ga0210394_10000354 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	103035
Total Scaffold Genes	90 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	69 (76.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

103035

Total Scaffold Genes

90 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

69 (76.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024035	Metagenome / Metatranscriptome	207	Y
F036396	Metagenome / Metatranscriptome	170	Y
F036945	Metagenome / Metatranscriptome	169	Y
F077903	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_1000035411	F036396	AGCAG	MASFAQFLGRKVTVQYRVGDVLLPASGTFAADSGRSIFLEQHVEQRGKLSYFRWEIPYQYIHRIEEAEEIPEPPAAPEAAPVEPENPQASAASAGLGLSSSAASLLSLPQRPKTV
Ga0210394_1000035412	F036945	N/A	VRTPWTAALAHSYEITCPACRAPLELSRFTRIFGAFGGIAGAFAALYLGRGIFHGWFWATPVVAAILAFGFVSALFVLLAGDLAVRPTPAAAASFPHTAK
Ga0210394_1000035461	F024035	AGGAG	MNKRILLCLALVLTSCLRAAAQDAKMQPLTFWYEYTVNPGKEAQFLELVKTVGAPVREKMLADGVVLAWGVEVPLLRMPGAATHVIWYSVADWGGIEKVDNAMHAQIAKLDEEAMKSGTGKKASAGGATVTARMMEAADVSKTRDYLTRDLVFVHGSGAPPAGVLPYTRFNYLKARPGKGSDLRKLWEKYNKPVLDKLVADGVVLAYGLAVEDVRTDGDFTHFVWYATKDLASMEKVRSAYAADREKRSQEEQDVISAEFLKVVDPEASRSEVTRSIMFHVGGMK
Ga0210394_1000035475	F077903	GGAGG	MTEDEKKSDHFDPESYPALMEFLPAYLHEDYSVEYGSAARAFAALVSDASGDQIRNVKEEWTALRQAFSGRPWPDVQGGLAQLGAAWRPESEQELQAVDEILSRADA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210394_10000354

Overview

Ecosystem & Geography

Associated Families

Sequences