NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000325

Scaffold Ga0210394_10000325


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000325 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)109445
Total Scaffold Genes85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)71 (83.53%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000749Metagenome / Metatranscriptome908Y
F002898Metagenome / Metatranscriptome522Y
F046597Metagenome / Metatranscriptome151Y
F099930Metagenome / Metatranscriptome103Y
F105941Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_1000032512F105941GAGGMWKITTRGFTLQEVLIMAATNIASALIATDQSERTTTPRTEIQEATGDCYGKGD
Ga0210394_1000032536F000749AGGAGMKSRGTSPKLAPHITISVSGKLVQGHLPYLDQLVRSAGECRLWAVLNLAHLEELDRAALLYLIDGENRDFSLDSCPSFIRERMDHEKDGAAA
Ga0210394_100003254F046597GGAGMLRVITIQTVDILTIKLEGRLTGERAEQVRTLVTRSNTEMRLVVDITELMFVDALGEEVLSFLKRFGAQFLAETAYSLDVCERLHLPLVPKQGSGALSAGPNGNTRPLGH
Ga0210394_1000032553F002898AGGAGMQDAGQKPSRLKLLLDFVKRLLGKKPTAPPGDPYAYVMAPVRRGPTGRSGAAVAEIEDDSYRSFPPRS
Ga0210394_100003258F099930GAGGMPNSTPNQKSPPAESVCCNRTSLSEVSERNETRDALYLFACHVEWCSKQSLVEYKELLAARDDHDCQIRTLAEELVSRSSSRPTY
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