Scaffold Ga0210394_10000251

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10000251
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 126499
• Total Scaffold Genes: 116
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 96 (82.76%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015633	Metagenome / Metatranscriptome	253	Y
F031163	Metagenome / Metatranscriptome	183	Y
F038452	Metagenome / Metatranscriptome	166	Y
F060941	Metagenome	132	Y
F066203	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_100002512	F060941	AGG	MTAIHQQNERFGFRGFMVKHQYKVMALSVCFGLVWVGIYHLAVKSWFFSRLSLLIAIICFVPAGIVVLIHGREFGPFLWWDRSNRVLTTRRSRKVEKAEFILMAILWSTIFVFVVIVIFFPSR
Ga0210394_1000025122	F015633	AGGTGG	VGTEHHVALMRSRKVNITGMATPRVLGAVLALLLLPCVAAAQAEAPKKVTWKSVEFAIVRFNDQAPNSWNIYHSEKKGILLVRLWKRYMLVKIQDEEVFDIDPQKITVHGDSAEWSYADIPDKPIEIVEWKERNIGSMQRVTFRIGKNGHVLELQIPLGLNREPMY
Ga0210394_1000025138	F066203	N/A	MVEPLQLQAAAWALTTTLELALFVQLVRRKLGRIYPCFFGYLLAVILQSIAVAVLYRSTNFDKLAVWKIAWATQGLVVFMRSLVVLELIRNILSRYIGIWGLAQRLFLSVAAAVIAYDLALSKGEWQWLIMNGMRGLELAMAAVIVAMMVFARYYRVPVNQFERALAIGLCLYSSFYVINYSLLERIFLLHDVLWNFLEILTFIASLLVWISAVGRYRESEEVAIPPAISAALYGKVSSEVNSRLLLLNRQLIQLLHLKDRGQ
Ga0210394_1000025139	F038452	N/A	MSLPLILLVLFAILLVGLLAWALRPPTPAIEPPLDVFEALSQSRHCSRISQILQTLQPEDTEYLREAGQAALMQTLRKQRRQIALNYLDRLQEEFETLLEISRVLALLSPEVVGIEEIERWKLSLAFAANCAFLRWKLRLGLQTFSGFTLLSSMATNIARQLDAATTRIAETAARGSEPSVPGPGNLGRL
Ga0210394_1000025181	F031163	N/A	MFHEPHIKNSACLTGKTPRAKWLVAHEARDGSCPEVLDTRNALRYLAFYLLFLRIQEERVPGIGISVRLLLKLAALSCSIVLLPLCAQELTGSQGQKQLLLHTNPVRETADFALVPSTHDFHTDLMPGGEQSYILLRPRLDSYSFDKSLWTSSPGAIQRMESAFYCNDTPFVDQVRLPLATFWRGRVKFVGFESDVTTANFVMGLPGQGALHNLSAFGGNGFLAVHTPPSDQLAGINMTFSWHAGSVETGESSGLHGIEHLVHASRGFLPFLSGRSESSSAVLQ