Scaffold Ga0210394

Basic Information
Taxon OID	3300021420 Open in IMG/M
Scaffold ID	Ga0210394_10000185 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	149340
Total Scaffold Genes	126 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	101 (80.16%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

149340

Total Scaffold Genes

126 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

101 (80.16%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000313	Metagenome / Metatranscriptome	1323	Y
F000628	Metagenome / Metatranscriptome	973	Y
F001195	Metagenome / Metatranscriptome	750	Y
F003283	Metagenome / Metatranscriptome	496	Y
F062505	Metagenome / Metatranscriptome	130	Y
F064473	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_10000185103	F000628	GGAG	VAVPPRGLLIRMLVRPVAIRRNVGFDVFNIRLLVGLDKLLRAKRRYQGDLSASINDALLAVNLDTVKLVTLQGKKKQTARETQVVLLRRLIRKLHNVAETRRCSINQLVNSGLAAYYSKQRLTKPRLPSRPTQKSASYDQMSTAERQRLVEALGNLAGRQEGPRSTFPDGSRYEYDPKLKRTVEVASSGKRYPVALVAGRFQRGVADATARKTAR
Ga0210394_10000185110	F064473	AGGAG	MAKLGSATMDDLLKQAKTTNRLLAAQLKSQMSQMELVKLLATTGLTAREIADVLDTTAATVAVTLQRLRHKAGKTSMRQSRTDVEE
Ga0210394_1000018512	F001195	GGAGG	MSRALTRTNLLLESGKVRQLRKTLHSRSNSEAVRRVIEERLAVEAGLGALRALRELGGPEDVFGRALTKKK
Ga0210394_10000185120	F062505	GAGG	MPISRLEVQHHSDLRPHLKQILSCVKSLHVTLSAVMADVAAIRKTMFEDPENIDTYRNQLKQTIATTKPLVDEAMLSYDFLMQEILDTEQWSN
Ga0210394_100001855	F000313	GAGG	LEGNKLLMKITDQWLLFKYVRGQFTPLSKPFKTKAAAEKERLKLPERERKSVAVGVIRIK
Ga0210394_1000018570	F003283	AGGGGG	MVTGPKGSEQDLSGQCSVCGHRGELFDLPGRYEQYCLGCSADVATAILLTTEIDAATLAGRSTSELVTEFDFIHIRMLCRAQSTELGNI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210394_10000185

Overview

Ecosystem & Geography

Associated Families

Sequences