Scaffold Ga0210394_10000089

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10000089
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 223701
• Total Scaffold Genes: 226
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 178 (78.76%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001986	Metagenome / Metatranscriptome	608	Y
F002731	Metagenome / Metatranscriptome	534	Y
F004852	Metagenome / Metatranscriptome	421	Y
F014766	Metagenome / Metatranscriptome	260	Y
F019865	Metagenome / Metatranscriptome	227	Y
F023916	Metagenome / Metatranscriptome	208	Y
F033916	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_10000089138	F033916	GGAG	LTSAAHNGTSRGIASFLLCAAVFAASFVADVARADNPPGDVIGVIEGEAISVDGPMTVEVVHGQVKTVLRSGSDVHVKAGDARIDLVEGGQIMICGPAHFSILKAGGAITLALDSGTIHAVVGNEVSLNIYTPQIQAHPISIGNGAEDVLVGLDNAGAMCIRANKGAVRVEQQLTGQSVLVPQSGDVSLTNGQIESLRAAAGHCVCVMQAVMKPMTSGIEISQLATADEIKKRAAEPKAPVTQENAAQVAQPEEPVYQVFMPPLRYDAKDKVQAEFDPNLIILVRRVRVRPTLIFQGRVEGDAVVAQASGPAAPASSRSKPQKPEEVSTWSRVKTYFRKLWSPST
Ga0210394_10000089148	F014766	AGGAG	MRKQFVLDKRTDKLLNELAYYVGGNRSMVIREAIKLYSHMEDRLDEIESDPAFQAMMAKSDEDIRQGRVVPHSEVLRMHRARGKGKKGKKK
Ga0210394_10000089155	F002731	AGGAGG	MATALIHLDDKQKRRLTMRARKVGRSFSQEVRNAIDLYLDFPVENEKDLEALAREAKEAADRSIKRLDETISYVNRGLKAIGKSR
Ga0210394_10000089209	F019865	AGGGGG	MAALWLVALLLGTGFAIATGPGPKWKILNVVIILGCMGIGLGLGYAIGLGSKNFGSVPNAAIPMSMMFGVLGAMVCVARNTWSAKA
Ga0210394_1000008929	F004852	N/A	VELTPGTISVESTAAGKSYEALKANTSGLEILLYPDSGHKLIRLEVRSAKVAVVSRGRRR
Ga0210394_1000008932	F001986	GGA	LDSIPTPNLWVPVCCSRVMRYNVFAQQGGAAYGVLVCPVCNKSVTFELEHQVDVSTYGEGSRVLSMLGSPKPPTAERKKPHGDAELDEKTL
Ga0210394_1000008962	F023916	GAG	MLSPARLTQLLMEFVFLMLGALVIWLAANGRIYFDRHGVAWLVLSVALIAWGLLALAKPGEFWAKWQKWNRGGSLVLLGVVMLAISRVPFDWVVKLLAAAGVVLVARGILGSLLILRQR