Scaffold Ga0210394_10000082

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10000082
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 228084
• Total Scaffold Genes: 234
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 169 (72.22%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001517	Metagenome / Metatranscriptome	679	Y
F002108	Metagenome / Metatranscriptome	592	Y
F002480	Metagenome / Metatranscriptome	555	Y
F006072	Metagenome / Metatranscriptome	382	Y
F008092	Metagenome / Metatranscriptome	339	Y
F011500	Metagenome / Metatranscriptome	290	Y
F018412	Metagenome / Metatranscriptome	235	Y
F034490	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_10000082140	F008092	GGA	MSTIPSTTIISNLKNATAATANTLKSSAVGGIDVSGMLALALSKAAELKVCLTLIVKSTDGADPNLVTLNDILASLT
Ga0210394_10000082143	F018412	GGAG	MNSAINPEAARPSTTQSLEQSDRNPVVSNLIGANTGEQIPTPLSTDSRVTQPGPVVSPNAGLQDYDMDDSVDNVQDEAEREG
Ga0210394_1000008216	F034490	GGAG	MDVSQAAAAKPARSAPPQDEVRSDLRNGLRRDARKLAGFGLPCAHCHLYYSADLDACPTCNNQERVSAKVTAIPKVQVTTETVPDTSVVEQEREAFLKEFKSQLFAAHAEVASSPAVCTLGEHHIQGPEAATICKPCYDRLQERLDVCEGALHIDVKEAAQIIYDAVWADPSDPSKTYTNAAGALLGELRKRSGVSSLLGPFHPLAD
Ga0210394_10000082184	F001517	AGGAG	MKKDEAHPSPADQTMVLSSLEHDQLVIAKKHPIPRRHLRGPELLVLWSLRLYLLFMMTVVAYQVWLAAH
Ga0210394_1000008238	F002480	N/A	MPPHTGFVMSGLPQPCSQWRVPRAHLESNTPAVLRFPDGQRTSANLQVISLTGGLLSLPQPVDQGSRVKVMFLTGEGSVLGGAEMLPPVSDALQPFRFVSLAADDQRRLGTLIWQQSNQNKSEEEWIEKLRAASANREEPRPWRFKLAGAVGLLTAGLATAAYLLHFGILK
Ga0210394_1000008243	F011500	GAG	VQIPVIVTSMDRRNPFSATCDALVVSAQGCGLRASQALPLETPILLSNLPGGASASARVASCLPLGHDGKQFLIGVSLYNPGNIWGIANPPPDWDCDSGGAAASPGNRASKNGNVWPYNVFSAHGEAHPGRK
Ga0210394_1000008244	F002108	AGG	MTQTAEQIALEASSARLEKGTPRPFRVKLRGSILTLIRLPNRRQVRGKLHQLSSTGGLVNLDKPLDEKLVVEFIFHLGETTIREKAQMLFPMWATQGWLQPFRFIDMPEASKTTLETSLTAFMQGLTDPVS
Ga0210394_1000008258	F006072	GGAGG	VSKTAAVVLGFLSFILFANISRAQLIPSGNVYVGVSESDSVDVVNRYTFRGWAASAEDMPFPRYSFFGAVVDTSGYYRKGIQQYDLLLGPRVSHNYGKWRPFVQLLGGFQRNTSDGVTHYIVAEDVGGGVDRKFHLLFLHNFSWRLQFDYVHTRLLSANQNEYRGSAGLVWRF