NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000035

Scaffold Ga0210394_10000035


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000035 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)313403
Total Scaffold Genes283 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)239 (84.45%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000313Metagenome / Metatranscriptome1323Y
F002815Metagenome / Metatranscriptome528Y
F035032Metagenome / Metatranscriptome173Y
F055352Metagenome / Metatranscriptome138N
F100520Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_1000003530F035032AGGAGMAIVKKPPETVNRPLQLERPVSELLDDYAKFVDCTPDYVANFALRKSLARDPDYRKWKAGQESANGGKRAAPPQQPGKPS
Ga0210394_1000003552F002815GAGMSLLRNLSEGFRSLFRKERIDKELDEELRGFLEMAAEEKIKQG
Ga0210394_1000003566F055352AGGAMSVRSCRVTVQDPDGISHTAEVTASSLFEAVAQGLAALRKREWVEGIEERFGTVKVSVADVRVEHQVKIADFMNWLERPGRTPREVSQRHSIRAILGMSVSR
Ga0210394_1000003569F100520GGAGGMTAPEAKLEYRIEREDGKFVAIDSDKETVGVYDSEEEAQAEIAREKKEDAMWDRTKNLMRTAVRTIMAEFSVDMETALAQVNSAAGMTVLGMEEGEDEPTR
Ga0210394_1000003586F000313N/AMAKTIEQWLLFRYVDGELTPLSKPFRTKQLAEKARLKYPERERKTIALGVIRRQP
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Institute for Fundamental Biomedical Research
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