Scaffold Ga0210394

Basic Information
Taxon OID	3300021420 Open in IMG/M
Scaffold ID	Ga0210394_10000033 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	316184
Total Scaffold Genes	283 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	223 (78.80%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

316184

Total Scaffold Genes

283 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

223 (78.80%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000043	Metagenome / Metatranscriptome	3655	Y
F018220	Metagenome / Metatranscriptome	236	Y
F024035	Metagenome / Metatranscriptome	207	Y
F028956	Metagenome / Metatranscriptome	190	Y
F066560	Metagenome / Metatranscriptome	126	Y
F077903	Metagenome / Metatranscriptome	117	Y
F089201	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_10000033143	F028956	GGCGG	VKQIFHEVVGAMFAVLAFGWFSSAFRAWSRDVAYWLIAMAVAVAGLFVLFAVSSFRRSRQ
Ga0210394_10000033157	F018220	AGGAGG	MQKILRCMGCQRGMRVVGSTGLGKHVARTAVCPYCNKKNKVTWPRGDQFNVQRVGSR
Ga0210394_10000033194	F024035	AGGAG	MKKRILLCLVVVLMSCLTAAAQDAKMQPLTFWYEYTVNPGKDAQFMDLVKTVGAPVRDKLLADGVILAWGVHVGLLRAPGSSTHIIWYSVADWSGIEKVDSAMRAQIGKLDEEAMKSGTAKKGSSGGATVTARMMEAADVSKTRDYITRDLVFVTGTGAPPAGVQPWTRYNYVKAKPGKGGDYRKVWEKYNKPVLDKLVADGTVLAYGLSVEEVRTDGDFTHYVWYATKDLASFDKVRAAFMADRDKRSQEEQDAITAEFLKTIEPDASRSEVDRSIMFHLGGMK
Ga0210394_10000033198	F066560	AGGA	MRELKIVETSGRGKTPLVVKGSLPRVFLGLGVFMEAGLLFCGSYLLADAILQPLDAGTFSVVGGGLFLALASVLLFYLAWPGKRGSISHREKPEVRPSEVASAKYEAAVPTRLQPNWVADKKEGLIRPM
Ga0210394_10000033210	F077903	GGAGG	MTDEGKKANDFDPEDYPALMEFLPAYLHEDFGVEYGSAARAFAALVSDANGDQIRNVKEEWQTLRQVFSGRPWPDLQSGLAQLGTAWRPESEQELQAVDGILSQADA
Ga0210394_10000033255	F000043	GAG	MIYQLGWTTLPGLRGLSVTEFRAVPTSTPDNEKGVAINLGDQSECESFLLLIEAEFAARRFTNAADAFDTVKAFALERANQ
Ga0210394_10000033264	F089201	GGAGG	MKLRSFNLGSFLGKTALATVALGFFLAAGAPAAKANDWDDCNRRIVYTESRYHEAVERFGPYSRDARHWEHERREAYERQARLRHEYREHHRDRDDRY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210394_10000033

Overview

Ecosystem & Geography

Associated Families

Sequences