NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000022

Scaffold Ga0210394_10000022


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000022 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)375224
Total Scaffold Genes348 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)270 (77.59%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001148Metagenome / Metatranscriptome765Y
F013472Metagenome / Metatranscriptome271Y
F039272Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_10000022126F039272GGAMKPIPLRTQLRLVAAGYAVVLAIAALLVYQRHLLYLNHPEDVAAAGGMYAAGDWMLEIFIACMLLVPTFVLVLVIRKSENLYTAYSKILLGLSLTAPISLGLLSIPAVGQGTMLLGWICMDRLLCSPVVIVGLVVSRLLARFDRAKRLTLYAVLIEVLTLALTAALFLFAATTHRG
Ga0210394_1000002213F013472AGGAGMFARIVEFIPKLEQKEQFVKVLHNEVLPILRKQTGFLEILPFFPETKTEKMITISLWAEKRDAERYEREVYPKVEGILKPYLTTPVCFKYYNLETTLCEHFVAALTA
Ga0210394_10000022343F001148AGGGGGVKDIHEVLRQKQAQQAQLGKQIEALQAAAEQIRGVAHLLNEEEGEREAGGVD

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