Scaffold Ga0210394_10000011

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10000011
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 482923
• Total Scaffold Genes: 459
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 343 (74.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000219	Metagenome / Metatranscriptome	1551	Y
F001772	Metagenome / Metatranscriptome	637	Y
F045491	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_10000011311	F001772	AGG	MRKRVSLGLASLVLLIAGYAIGNRKPTVVHANAAPTQGVVPRSYGRLVAGIADQIGTGLVFEDAEGVIRFVSVNGMKEGELARYDKTPTHGGIPKSYGHLVTAVVNPEGTALVFEDGAGTIRFVTLTGVKESELTRN
Ga0210394_10000011345	F045491	N/A	MGRAANGALSMCLGVSFDRPFVISLWLRLHAILGIAMTHFPQPHPQQRATRVKMEATASALVKLEDGQRAKARIQTVSVTGGLLRLARALEEGGFVEVAFQTQSGPVHGMAEMLHPRRISPEGILQPFRFIALDDTDHNTLSFAVNSTTERNFLLGSRQSSRKV
Ga0210394_1000001173	F000219	N/A	MESNRTQLWIAAGAGGILLVIFFGYLIWLNNQGPVLARSEDRDPLSGTPNTISLNPLRDRDSERVAAKYLEAMRDGQCKEELTKWEHDYRRKYAAFICDSETKHPLVSWKVVDWEDAPPLRILHYRGKRRTTEGEPATYKELFTVTLENKGGNWEVTKYDAMY