Scaffold Ga0193695_1000006

Overview

Basic Information

• Taxon OID: 3300021418
• Scaffold ID: Ga0193695_1000006
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 130032
• Total Scaffold Genes: 140
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 98 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9137
  • Long. (^o): -106.8949
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015614	Metagenome / Metatranscriptome	253	Y
F025499	Metagenome / Metatranscriptome	201	Y
F063562	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193695_1000006113	F025499	N/A	MLGVGDQVPGATVWMAPREPTTIAELVVDAPALFLFFLFAWSST
Ga0193695_100000626	F063562	GGAGG	MNGNGGELSSFLAKLSEDPQLQDAYAQDPQGTMREAGLSDDTIQTLLSRDLGKVKAVLDKELAGSGYIMFMVIFEPKA
Ga0193695_100000680	F015614	N/A	VGKRRLVALLLGAASLLGIGLYARRGGASERVDLYFADGSLVSLDGDSPEAARLLPPAHDALRAARS